Yazar "Atakan, Ahmet" için listeleme
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CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations
Doğan, Tunca; Ataş, Heval; Joshi, Vishal; Atakan, Ahmet; Rifaioğlu, Ahmet Süreyya; Nalbat, Esra; Nightingale, Andrew; Saidi, Rabie; Volynkin, Vladimir; Zellner, Hermann; Atalay, Rengül Çetin; Martin, Maria; Atalay, Volkan (Oxford Academic, 2021)Systemic analysis of available large-scale biological/biomedical data is critical for studying biological mechanisms, and developing novel and effective treatment approaches against diseases. However, different layers of ... -
ProFAB—open protein functional annotation benchmark
Özdilek, A. Samet; Atakan, Ahmet; Özsarı, Gökhan; Acar, Aybar; Atalay, M. Volkan; Doğan, Tunca; Rifaioğlu, Ahmet Süreyya (Oxford University Press, 2023)As the number of protein sequences increases in biological databases, computational methods are required to provide accurate functional annotation with high coverage. Although several machine learning methods have been ... -
SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins
Özsarı, Gökhan; Rifaioğlu, Ahmet Süreyya; Atakan, Ahmet; Tunca, Doğan; Martin, Maria Jesus; Atalay, Rengül Çetin; Atalay, Volkan (Oxford University Press, 2022)Accurate prediction of the subcellular locations (SLs) of proteins is a critical topic in protein science. In this study, we present SLPred, an ensemble-based multi-view and multi-label protein subcellular localization ... -
Transfer learning for drug–target interaction prediction
Dalkıran, Alperen; Atakan, Ahmet; Rifaioğlu, Ahmet Süreyya; Martin, Maria Jesús; Atalay, Rengül Çetin; Acar, Aybar Can; Doǧan, Tunca; Atalay, Volkan (Oxford University Press, 2023)MotivationUtilizing AI-driven approaches for drug-target interaction (DTI) prediction require large volumes of training data which are not available for the majority of target proteins. In this study, we investigate the ...
